CCP4 Projects

This page gives links to various projects that CCP4 is involved in, indicating the breadth of CCP4 activities.

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[ Core Projects ] [ Grants and Collaborations ] [ Related/Contributed Software ]

Core Projects

	COOT	Graphical model building	coot homepage
	CCP4i	CCP4 Graphical User Interface	http://www.ccp4.ac.uk/ccp4i_main.php
	CCP4i2	CCP4i2 Graphical User Interface	http://www.ccp4.ac.uk/ccp4i2/ccp4i2-home.htm
	CCP4MG	CCP4 Molecular Graphics Project	http://www.ccp4.ac.uk/MG/
	MrBUMP	Automated Molecular Replacement	http://www.ccp4.ac.uk/MrBUMP/
	PISA	Protein Interfaces, Surfaces and Assemblies	http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html
	MOSFLM GUI	Building a modern interface to MOSFLM	http://www.mrc-lmb.cam.ac.uk/harry/imosflm/index.html
	Gemmi	General MacroMolecular I/O	project-gemmi.github.io

Grants and Collaborations

Ongoing

	DIALS	Diffraction Integration for Advanced Light Sources	http://dials.sourceforge.net/
	PiMS	Protein Information Management System project	http://www.pims-lims.org/
	Cyttron II	Development of bioimaging technologies	http://www.cyttron.org/
	Instruct	Integrated access to structural biology technology and methodologies	http://www.structuralbiology.eu/
	Dimple	Pipeline for refinement and ligand screening	http://ccp4.github.io/dimple/
	BioStruct-X	Support access for key methods in structural biology	http://www.biostruct-x.eu/

Selected completed grants

• DNA: Automating the collection and processing of X-Ray protein crystallography data
• Max-Inf2: European Macromolecular Crystallography Infrastructure Cooperation Network
• SPINE / SPINE2: Structural Proteomics in Europe
• e-HTPX: E-science Resource for High Throughput Protein Crystallography
• Bioxhit: Biocrystallography (X) on a Highly Integrated Technology Platform for European Structural Genomics
• AutoStruct: Automation in Structure Determination (see in particular Test Data)

Related and Contributed Software Projects

CCP-EM	Collaborative Computational Project for Electron cryo-Microscopy	http://www.ccpem.ac.uk/
John Campbell	John Campbell's Java Based Software including PXImage and PXSim	http://www.ccp4.ac.uk/jwc/Xhtml/CCP4/ccp4_jwc_top.html
AMPLE	Ab initio modelling for Molecular Replacement	http://www.ccp4.ac.uk/ample/
Refmac	Garib Murshudov's Maximum Likelihood Macromolecular Refinement Program	http://www2.mrc-lmb.cam.ac.uk/groups/murshudov/
MOLREP & SFCHECK	Alexei Vagin's software for Molecular Replacement and for assessing reflection data quality	http://www.ysbl.york.ac.uk/~alexei/
Mosflm	Integration software for single crystal diffraction data from area detectors	http://www.mrc-lmb.cam.ac.uk/harry/mosflm/
Phaser	Randy Read group's program for phasing macromolecular crystal structures using Maximum Likelihood method	http://www-structmed.cimr.cam.ac.uk/phaser/
Coot	Paul Emsley's Graphical Model Building Program	http://www.biop.ox.ac.uk/coot/
WinCoot	Bernhard Lohkamp's page for the Windows version of Coot	http://www.ysbl.york.ac.uk/~lohkamp/coot/wincoot.html
Clipper	Kevin Cowtan's crystallographic libraries and applications	http://www.ysbl.york.ac.uk/~cowtan/
PDBExtract	RCSB software for preparing data for submission to the PDB	http://sw-tools.pdb.org/apps/PDB_EXTRACT/index.html
CHOOCH	Gwyndaf Evans' program for analysing fluorescence spectra	http://www.gwyndafevans.co.uk/
XIA2	Graeme Winter's tools for automating macromolecular crystallographic data reduction	http://www.ccp4.ac.uk/xia
UglyMol	Web-based molecular viewer mimicking Coot	https://uglymol.github.io/

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If you feel that the information on this page is inaccurate, or if something is missing, then please contact CCP4 at ccp4@ccp4.ac.uk.

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