Tutorial
CCP4 tutorial
Roadmaps
ROADMAPS
General Introduction
Introduction
File Selection
Database
FileViewer
Loggraph
Running a Job
Creating Maps
Data Harvesting
Preferences
Run Tests
Cut_and_Paste
Additional Programs
Interface Modules
Data Reduction
Experimental Phasing
Molecular Replacement
Density Improvement
Model Building
Refinement
Structure Analysis
Validation & Deposition
Map&Mask Utilities
Reflection Data Utilities
Coordinate Utilities
Graphics and Viewing Utilities
Clipper Utilities
Program List
Interface tasks
Data Reduction:
Integrate Images
Import Merged Data
Import Unmerged Data
Sort/Modify/Combine MTZ Files
Scale and Merge Intensities
Convert Intensities to SFs
Treat Twinned Data
Determine Laue Group
Test Alternative Indexing
Check Centre of Symmetry
Experimental Phasing:
CAD
Scale Datasets
SHELX C/D/E - HA Search and Phasing
Prepare Data for HA Search
ACORN
SHELXS
RANTAN
PROFESSS
MLPHARE
BP3
CRANK
OASIS
Generate Patterson
RSPS
MR:
Cell Content Analysis
Analyse Data
Create Search Model
Self RF in polars
BEAST
PHASER
MOLREP
SFs from Model
AMoRe Model Database
AMoRe
Edit AMoRe Solution File
Build AMoRe Output Model
MODELLER
Density Improvement:
Cell Content Analysis
PROFESSS
'
dm
'
Solomon
'
dm
multi'
MakeReference
Pirate
Model Building:
FFFear
FFJoin
XtalView/xfit
Refinement:
Refmac5
Edit Restraints
Monomer Library Sketcher
Merge monomer libraries
NCS Phased Refinement
WATERTIDY
Create/Edit TLS file
ANISOANL
TLSANL
SFCHECK/PROCHECK
Structure Analysis:
AREAIMOL
Find molecular contacts
PISA webservice
BAVERAGE
Validation & Deposition:
SFCHECK/PROCHECK
WHATCHECK
ROTAMER
MTZ2CIF
Data Harvesting Management Tool
Map&Mask Utilities:
Task-Specific Maps
FFT
Generate Patterson
NCSmask
Mapmask/Maprot
Map Averaging
Map Correlation
Map Cutting
View map sections
Reflection Data Utilities:
Analyse Data Quality
SFALL
Convert to MTZ
Convert from MTZ
SFtools
CAD
Edit MTZ Datasets
REINDEX
PHISTATS
SFtools-analysis
SIGMAA
Coordinate Utilities:
Cell Content Analysis
COORDCONV
PDBCUR / PDBSET
Superpose Molecules
Create/Edit TLS File
Import/Edit Protein Sequence
ClustalW Interface
Graphics and Viewing Utilities:
AstexViewer
CCP4mg
idiffdisp
Loggraph
MapSlicer
RasMol
TopDraw
Specialist Help
FreerUnique
Reindexing
Twinning
ScaleChoose
MOLREPTheory
Data Harvesting
External Special Help
MIRTutorial(Bath)
MRTutorial(Bath)
SFTutorial(Cowtan)
FourierBook(Cowtan)
dmWorkshop(Cowtan)
Installing/Programming
Configuration
Install New Task
Documentation for Programmers
Last modified:
June, 2003
mgwt@ysbl.york.ac.uk
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