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CCP4i: Graphical User Interface |
Clipper utilities |
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This module provides a set of interfaces for utilities based on Kevin Cowtan's Clipper libraries. It should be noted that the documentation for many of these interfaces is incomplete or missing - please contact CCP4 or Kevin Cowtan if you have questions or problems.
See also: Kevin Cowtan's home page: http://www.ysbl.york.ac.uk/~cowtan
The layout of each task window, i.e. the number of folders present, and whether these folders are open or closed by default, depends on the choices made in the Protocol folder of the task (see Introduction). Although certain folders are closed by default, there are specific reasons why you should or may want to look at them. These reasons are described in the Task Window Layout sections below.
This task should be used to generate suitable reference structures can be constructed from the PDB. See phase improvement module for further details.
See program documentation: cpirate
This task is used to run the pirate program to perform statistical phase improvement. See phase improvement module for further details.
See program documentation: cpirate
Convert to/from Hendrickson-Lattman coefficients.
See program documentation: chltofom
No documentation available, see notes below
No documentation available, see notes below
No documentation available, see notes below
No documentation available, see notes below
No documentation available, see notes below
No documentation available, see notes below
No documentation available, see notes below
No documentation available, see notes below
The jiffy programs above perform a specific crystallographic task. Please note that the csigmaa is not a replacement for the sigmaa program.
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