CCP4 Roadmaps
COORDINATE UTILITIES
COORDINATE FILE MANIPULATIONS
CCP4 programs used in Coordinate file manipulation
CCP4i task
Associated CCP4 program(s)
Cell Content Analysis
MATTHEWS_COEF
Misha Isupov's Jiffy to calculate Matthews coefficient
Convert Coordinate Formats
COORDCONV
Interconvert various coordinate formats
Edit PDB File
PDBSET
Various useful manipulations on coordinate files
Superpose Molecules
LSQKAB
Apply various transformations to coordinate files
TOP
Topological comparison program
Auxiliary CCP4 programs used in these tasks
BONES2PDB
Make a PDB pseudo-coordinate file from a bones file
GENSYM
Generate sites by symmetry
GEOMCALC
Molecular geometry calculations
HGEN
Generate hydrogen atom positions for proteins
MAKEDICT
Converts PDB file to TNT or PROTIN dictionaries and PROTIN to PDB
RWCONTENTS
Count atoms by type
SORTWATER
Sort waters by the protein chain to which they "belong"
STEREO
Extract coordinates from stereo diagrams
WATERTIDY
Rationalise waters at the end of refinement
WATPEAK
Select peaks from peakmax and put them close to the appropriate protein atoms
Further reading
CCP4 Program Documentation