Tutorial
bulletCCP4 tutorial

Roadmaps
bulletROADMAPS

General Introduction
bulletIntroduction
bulletFile Selection
bulletDatabase
bulletFileViewer
bulletLoggraph
bulletRunning a Job
bulletCreating Maps
bulletData Harvesting
bulletPreferences
bulletRun Tests
bulletCut_and_Paste
bulletAdditional Programs

Interface Modules
bulletData Reduction
bulletExperimental Phasing
bulletMolecular Replacement
bulletDensity Improvement
bulletModel Building
bulletRefinement
bulletStructure Analysis
bulletValidation & Deposition
bulletMap&Mask Utilities
bulletReflection Data Utilities
bulletCoordinate Utilities
bulletGraphics and Viewing Utilities
bulletClipper Utilities
bulletProgram List

Interface tasks
Data Reduction:
bulletIntegrate Images
bulletImport Merged Data
bulletImport Unmerged Data
bulletSort/Modify/Combine MTZ Files
bulletScale and Merge Intensities
bulletConvert Intensities to SFs
bulletTreat Twinned Data
bulletDetermine Laue Group
bulletTest Alternative Indexing
bulletCheck Centre of Symmetry
Experimental Phasing:
bulletCAD
bulletScale Datasets
bulletSHELX C/D/E - HA Search and Phasing
bulletPrepare Data for HA Search
bulletACORN
bulletSHELXS
bulletRANTAN
bulletPROFESSS
bulletMLPHARE
bulletBP3
bulletCRANK
bulletOASIS
bulletGenerate Patterson
bulletRSPS
MR:
bulletCell Content Analysis
bulletAnalyse Data
bulletCreate Search Model
bulletSelf RF in polars
bulletBEAST
bulletPHASER
bulletMOLREP
bulletSFs from Model
bulletAMoRe Model Database
bulletAMoRe
bulletEdit AMoRe Solution File
bulletBuild AMoRe Output Model
bulletMODELLER
Density Improvement:
bulletCell Content Analysis
bulletPROFESSS
bullet'dm'
bulletSolomon
bullet'dmmulti'
bulletMakeReference
bulletPirate
Model Building:
bulletFFFear
bulletFFJoin
bulletXtalView/xfit
Refinement:
bulletRefmac5
bulletEdit Restraints
bulletMonomer Library Sketcher
bulletMerge monomer libraries
bulletNCS Phased Refinement
bulletWATERTIDY
bulletCreate/Edit TLS file
bulletANISOANL
bulletTLSANL
bulletSFCHECK/PROCHECK
Structure Analysis:
bulletAREAIMOL
bulletFind molecular contacts
bulletPISA webservice
bulletBAVERAGE
Validation & Deposition:
bulletSFCHECK/PROCHECK
bulletWHATCHECK
bulletROTAMER
bulletMTZ2CIF
bulletData Harvesting Management Tool
Map&Mask Utilities:
bulletTask-Specific Maps
bulletFFT
bulletGenerate Patterson
bulletNCSmask
bulletMapmask/Maprot
bulletMap Averaging
bulletMap Correlation
bulletMap Cutting
bulletView map sections
Reflection Data Utilities:
bulletAnalyse Data Quality
bulletSFALL
bulletConvert to MTZ
bulletConvert from MTZ
bulletSFtools
bulletCAD
bulletEdit MTZ Datasets
bulletREINDEX
bulletPHISTATS
bulletSFtools-analysis
bulletSIGMAA
Coordinate Utilities:
bulletCell Content Analysis
bulletCOORDCONV
bulletPDBCUR / PDBSET
bulletSuperpose Molecules
bulletCreate/Edit TLS File
bulletImport/Edit Protein Sequence
bulletClustalW Interface
Graphics and Viewing Utilities:
bulletAstexViewer
bulletCCP4mg
bulletidiffdisp
bulletLoggraph
bulletMapSlicer
bulletRasMol
bulletTopDraw

Specialist Help
bulletFreerUnique
bulletReindexing
bulletTwinning
bulletScaleChoose
bulletMOLREPTheory
bulletData Harvesting

External Special Help
bulletMIRTutorial(Bath)
bulletMRTutorial(Bath)
bulletSFTutorial(Cowtan)
bulletFourierBook(Cowtan)
bulletdmWorkshop(Cowtan)

Installing/Programming
bulletConfiguration
bulletInstall New Task
bulletDocumentation for Programmers

Last modified:
June, 2003
mgwt@ysbl.york.ac.uk
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