Sol_
Sol_ --- SFCHECK --- /Vers 7.0.11; 03.05.2005/
Sol_ Memory: 10 Mb N_atom_max: 40000
Sol_
Dataset id missing from COLUMN records in MTZ header.
Making default assignments.
>>>>>> CCP4 library signal mtz:Missing or incomplete dataset information in input file. (Warning)
raised in MtzGet <<<<<<
OPENED INPUT MTZ FILE
Logical Name: bar_wt_ph6_twin-0.3-p32-p3221.mtz Filename: bar_wt_ph6_twin-0.3-p32-p3221.mtz
-----------------------------------
--- MTZ file :bar_wt_ph6_twin-0.3-p32-p3221.mtz
No Label type
1 H H
2 K H
3 L H
4 F F
5 SIGF Q
6 FT1 F
7 SIGFT1 Q
8 FT2 F
9 SIGFT2 Q
10 FT3 F
11 SIGFT3 Q
-----------------------------------
Dataset id missing from COLUMN records in MTZ header.
Making default assignments.
>>>>>> CCP4 library signal mtz:Missing or incomplete dataset information in input file. (Warning)
raised in MtzGet <<<<<<
OPENED INPUT MTZ FILE
Logical Name: bar_wt_ph6_twin-0.3-p32-p3221.mtz Filename: bar_wt_ph6_twin-0.3-p32-p3221.mtz
Data line--- LABIN F=FT2 SIGF=SIGFT2
FORMATTED UNKNOWN file opened on unit 22
Logical name: sfcheck_mtz.cif, Filename: sfcheck_mtz.cif
Dataset id missing from COLUMN records in MTZ header.
Making default assignments.
>>>>>> CCP4 library signal mtz:Missing or incomplete dataset information in input file. (Warning)
raised in MtzGet <<<<<<
OPENED INPUT MTZ FILE
Logical Name: bar_wt_ph6_twin-0.3-p32-p3221.mtz Filename: bar_wt_ph6_twin-0.3-p32-p3221.mtz
N,hkl,F,sig,stat : 5000 4 1 23 4294. 136.9 o
N,hkl,F,sig,stat : 10000 8 9 -13 5447. 164.3 o
N,hkl,F,sig,stat : 15000 14 10 0 5843. 222.4 o
--- read file of structure factors. ---
Environment variable SYMINFO not set ... guessing location of symmetry file.
SYMINFO file set to /home/briggs/CCP4_REMOTE/ccp4/lib/data/syminfo.lib
-->SYSABS:H,K,L,I,SD: 0 0 -16 25600.00 13648.00
-->SYSABS:H,K,L,I,SD: 0 0 -14 9604.00 6865.88
-->SYSABS:H,K,L,I,SD: 0 0 -13 43264.00 17110.08
-->SYSABS:H,K,L,I,SD: 0 0 -11 25600.00 13648.00
-->SYSABS:H,K,L,I,SD: 0 0 -10 43264.00 17110.08
-->SYSABS:H,K,L,I,SD: 0 0 -8 15129.00 9741.60
-->SYSABS:H,K,L,I,SD: 0 0 -7 15129.00 9741.60
-->SYSABS:H,K,L,I,SD: 0 0 -5 25600.00 13648.00
-->SYSABS:H,K,L,I,SD: 0 0 -4 15129.00 9741.60
-->SYSABS:H,K,L,I,SD: 0 0 4 15129.00 9741.60
-->SYSABS:H,K,L,I,SD: 0 0 5 25600.00 13648.00
-->SYSABS:H,K,L,I,SD: 0 0 7 15129.00 9741.60
-->SYSABS:H,K,L,I,SD: 0 0 8 15129.00 9741.60
-->SYSABS:H,K,L,I,SD: 0 0 10 43264.00 17110.08
-->SYSABS:H,K,L,I,SD: 0 0 11 25600.00 13648.00
-->SYSABS:H,K,L,I,SD: 0 0 13 43264.00 17110.08
-->SYSABS:H,K,L,I,SD: 0 0 14 9604.00 6865.88
-->SYSABS:H,K,L,I,SD: 0 0 16 25600.00 13648.00
--- Pscale ---
--- Check Patterson for pseudo-translation ---
--- Twinning test ---
--- file statistics ---
----------------------------------------------
--- Crystal ---
PDB_code : XXXX
Name : XXXXXXXX ?
Date :XX-XXX-XX
Cell: 59.39 59.39 82.59 90.00 90.00 120.00
Space group : P 32
No symmetry operators : 3
----------------------------------------------
--- Structure factors ---
Resolution /input data/ : 29.69 - 2.19
Number of reflections : 16129 ( in_file : 17387)
Number of unacceptable reflections : 18
Number of unacceptable reflections as systematycal absent : 18
Number of reflections with I > sigma(I) : 17369
Number of reflections with I > 3sigma(I): 17260
R_stand(I) = / : 0.068
Rmerge : 0.000 ( 2480 --> 1240)
Number of acceptable reflections: 16129
for resolution : 29.69 - 2.19
Optical Resolution: 1.60
Expected Optical Resolution for complete data set: 1.60
/ Optical resolution - expected minimal distance between
two resolved peaks in the electron density map./
Resmax_used(opt): 2.37
Number of max possible refls : 16749 actual : 16129
Completeness : 96.3 %
R_stand(F) = / :0.034
Boverall /estimated by Patterson/ : 26.47
Minimal estimated error : 0.0225
Pseudo-translation is not detected.
Minimal estimated error : 0.0225
Perfect twinning test /^2 : 1.5840
Partial Twinning test:
+k,h,-l
Polar angles: 89.99 60.00 180.00
Alpha(twin fraction),Npair,Ior,Tol : 0.322 18130 2 0.000
--- Partial Twinning Test : H = !I(h1)-I(h2)!/(I(h1)+I(h2)) ---
Alpha(twinning fraction) = 1/2 -
Reflection related to hkl :
+k,h,-l
Cumulative distribution of H
0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1
*---+---+---+---+---+---+---+---+---+---+
!++O.+ . . . . . . . . !
! ++.+O . + . . . . . . . !
! +++ O . +. . . . . . !
0.10!---++-+--+O--------+-------------------!
! .++ + .O . . .+ . . . !
! . + + + . +O . . . + . . !
! . +.+ + . O . . . . +. !
0.20!-------+-+--+------O-------------------+ alpha=0.4
! . .+ +. +. . O. . . . +
! . . + .+ .+ . .O . . . +
! . . +. + . + . . O+ . . +
0.30!-----------+--+----+--------O+---------+
! . . .+ + . + . . O+ . +
! . . . + .+ . +. . . O+. +
! . . . +. +. .+ . . O + +
0.40!---------------+---+------+----------O-+ alpha=0.3
! . . . .+ .+ . + . . O+
! . . . . + . +. . + . . O+
! . . . . +. + . + . O+
0.50!-------------------+----+-------+-----O+
! . . . . .+ . + . . +. O+
! . . . . . + . + . .+ O+
! . . . . . +. .+ . . +O+
0.60!-----------------------+-----+--------O+ alpha=0.2
! . . . . . .+ . +. . O+
! . . . . . . + . .+ . O+
! . . . . . . +. . + . O+
0.70!---------------------------+------+---O+
! . . . . . . .+ . + O+
! . . . . . . . + . . +O+
! . . . . . . . +. . O+
0.80!-------------------------------+------O+ alpha=0.1
! . . . . . . . .+ . O+
! . . . . . . . . + . O+
! . . . . . . . . +. O+
0.90!-----------------------------------+--O+
! . . . . . . . . .+ O+
! . . . . . . . . . +O+
! . . . . . . . . . O+
H *---+---+---+---+---+---+---+---+---+---* alpha=0
0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1
Anisotropic distribution of Structure Factors:
Ratio of Eigen values : 0.8569 0.8569 1.0000
----------------------------------------------
--- Create PostScript file ---
XXXX
* Plotfile: sfcheck_XXXX.ps
Sol_
Sol_ --- SFCHECK --- /Vers 7.0.11; 03.05.2005/
Sol_ Memory: 10 Mb N_atom_max: 40000
Sol_
Dataset id missing from COLUMN records in MTZ header.
Making default assignments.
>>>>>> CCP4 library signal mtz:Missing or incomplete dataset information in input file. (Warning)
raised in MtzGet <<<<<<
OPENED INPUT MTZ FILE
Logical Name: bar_wt_ph6_twin-0.3-p32-p3221.mtz Filename: bar_wt_ph6_twin-0.3-p32-p3221.mtz
-----------------------------------
--- MTZ file :bar_wt_ph6_twin-0.3-p32-p3221.mtz
No Label type
1 H H
2 K H
3 L H
4 F F
5 SIGF Q
6 FT1 F
7 SIGFT1 Q
8 FT2 F
9 SIGFT2 Q
10 FT3 F
11 SIGFT3 Q
-----------------------------------
Dataset id missing from COLUMN records in MTZ header.
Making default assignments.
>>>>>> CCP4 library signal mtz:Missing or incomplete dataset information in input file. (Warning)
raised in MtzGet <<<<<<
OPENED INPUT MTZ FILE
Logical Name: bar_wt_ph6_twin-0.3-p32-p3221.mtz Filename: bar_wt_ph6_twin-0.3-p32-p3221.mtz
Data line--- LABIN F=F SIGF=SIGF
FORMATTED UNKNOWN file opened on unit 22
Logical name: sfcheck_mtz.cif, Filename: sfcheck_mtz.cif
Dataset id missing from COLUMN records in MTZ header.
Making default assignments.
>>>>>> CCP4 library signal mtz:Missing or incomplete dataset information in input file. (Warning)
raised in MtzGet <<<<<<
OPENED INPUT MTZ FILE
Logical Name: bar_wt_ph6_twin-0.3-p32-p3221.mtz Filename: bar_wt_ph6_twin-0.3-p32-p3221.mtz
N,hkl,F,sig,stat : 5000 3 21 9 2952. 141.0 o
N,hkl,F,sig,stat : 10000 8 6 6 7194. 313.0 o
N,hkl,F,sig,stat : 15000 14 6 -2 2103. 112.0 o
--- read file of structure factors. ---
Environment variable SYMINFO not set ... guessing location of symmetry file.
SYMINFO file set to /home/briggs/CCP4_REMOTE/ccp4/lib/data/syminfo.lib
-->SYSABS:H,K,L,I,SD: 0 0 -16 25600.00 17920.00
-->SYSABS:H,K,L,I,SD: 0 0 -14 9604.00 9016.00
-->SYSABS:H,K,L,I,SD: 0 0 -13 43264.00 22464.00
-->SYSABS:H,K,L,I,SD: 0 0 -11 25600.00 17920.00
-->SYSABS:H,K,L,I,SD: 0 0 -10 43264.00 22464.00
-->SYSABS:H,K,L,I,SD: 0 0 -8 15129.00 12792.00
-->SYSABS:H,K,L,I,SD: 0 0 -7 15129.00 12792.00
-->SYSABS:H,K,L,I,SD: 0 0 -5 25600.00 17920.00
-->SYSABS:H,K,L,I,SD: 0 0 -4 15129.00 12792.00
-->SYSABS:H,K,L,I,SD: 0 0 4 15129.00 12792.00
-->SYSABS:H,K,L,I,SD: 0 0 5 25600.00 17920.00
-->SYSABS:H,K,L,I,SD: 0 0 7 15129.00 12792.00
-->SYSABS:H,K,L,I,SD: 0 0 8 15129.00 12792.00
-->SYSABS:H,K,L,I,SD: 0 0 10 43264.00 22464.00
-->SYSABS:H,K,L,I,SD: 0 0 11 25600.00 17920.00
-->SYSABS:H,K,L,I,SD: 0 0 13 43264.00 22464.00
-->SYSABS:H,K,L,I,SD: 0 0 14 9604.00 9016.00
-->SYSABS:H,K,L,I,SD: 0 0 16 25600.00 17920.00
--- Pscale ---
--- Check Patterson for pseudo-translation ---
--- Twinning test ---
--- file statistics ---
----------------------------------------------
--- Crystal ---
PDB_code : XXXX
Name : XXXXXXXX ?
Date :XX-XXX-XX
Cell: 59.39 59.39 82.59 90.00 90.00 120.00
Space group : P 32
No symmetry operators : 3
----------------------------------------------
--- Structure factors ---
Resolution /input data/ : 29.69 - 2.19
Number of reflections : 16302 ( in_file : 17560)
Number of unacceptable reflections : 18
Number of unacceptable reflections as systematycal absent : 18
Number of reflections with I > sigma(I) : 17530
Number of reflections with I > 3sigma(I): 16843
R_stand(I) = / : 0.088
Rmerge : 0.000 ( 2480 --> 1240)
Number of acceptable reflections: 16302
for resolution : 29.69 - 2.19
Optical Resolution: 1.60
Expected Optical Resolution for complete data set: 1.60
/ Optical resolution - expected minimal distance between
two resolved peaks in the electron density map./
Resmax_used(opt): 2.37
Number of max possible refls : 16749 actual : 16302
Completeness : 97.3 %
R_stand(F) = / :0.046
Boverall /estimated by Patterson/ : 26.60
Minimal estimated error : 0.0309
Pseudo-translation is not detected.
Minimal estimated error : 0.0309
Perfect twinning test /^2 : 1.9371
Partial Twinning test:
+k,h,-l
Polar angles: 89.99 60.00 180.00
Alpha(twin fraction),Npair,Ior,Tol : 0.054 18130 2 0.000
--- Partial Twinning Test : H = !I(h1)-I(h2)!/(I(h1)+I(h2)) ---
Alpha(twinning fraction) = 1/2 -
Reflection related to hkl :
+k,h,-l
Cumulative distribution of H
0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1
*---+---+---+---+---+---+---+---+---+---+
!+O+.+ . . . . . . . . !
! ++O+ . + . . . . . . . !
! ++O + . +. . . . . . !
0.10!---++O+--+---------+-------------------!
! .++O+ .+ . . .+ . . . !
! . + O + . +. . . . + . . !
! . +.O + . + . . . . +. !
0.20!-------+-O--+------+-------------------+ alpha=0.4
! . .+ O. +. . +. . . . +
! . . +O.+ .+ . .+ . . . +
! . . +O + . + . . + . . +
0.30!-----------+-O+----+---------+---------+
! . . .+O + . + . . .+ . +
! . . . +O.+ . +. . . +. +
! . . . +O +. .+ . . . + +
0.40!---------------+O--+------+------------+ alpha=0.3
! . . . .+O .+ . + . . +
! . . . . +O. +. . + . . +
! . . . . +O + . + . +
0.50!-------------------+O---+-------+------+
! . . . . .+O . + . . +. +
! . . . . . +O. + . .+ +
! . . . . . +O .+ . . + +
0.60!-----------------------+O----+---------+ alpha=0.2
! . . . . . .O . +. . +
! . . . . . . O . .+ . +
! . . . . . . O. . + . +
0.70!---------------------------O------+----+
! . . . . . . .O . + +
! . . . . . . . O . . + +
! . . . . . . . O. . ++
0.80!-------------------------------O-------+ alpha=0.1
! . . . . . . . .O . +
! . . . . . . . . O . +
! . . . . . . . . O. +
0.90!----------------------------------O+---+
! . . . . . . . . O+ +
! . . . . . . . . .O+ +
! . . . . . . . . . O++
H *---+---+---+---+---+---+---+---+---+---* alpha=0
0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1
Anisotropic distribution of Structure Factors:
Ratio of Eigen values : 0.8591 0.8591 1.0000
----------------------------------------------
--- Create PostScript file ---
XXXX
* Plotfile: sfcheck_XXXX.ps
Sol_
Sol_ --- SFCHECK --- /Vers 7.0.11; 03.05.2005/
Sol_ Memory: 10 Mb N_atom_max: 40000
Sol_
OPENED INPUT MTZ FILE
Logical Name: /home/briggs/CCP4_REMOTE/ccp4/examples/rnase/rnase25.mtz Filename: /home/briggs/CCP4_REMOTE/ccp4/examples/rnase/rnase25.mtz
-----------------------------------
--- MTZ file :/home/briggs/CCP4_REMOTE/ccp4/examples/rnase/rnase25.mtz
No Label type
1 H H
2 K H
3 L H
4 FNAT F
5 SIGFNAT Q
6 FreeR_flag I
7 FHG2 F
8 SDFHG2 Q
9 FHG2DEL D
10 SDFHG2DEL Q
11 FPTNCD25 F
12 SIGFPTNCD25 Q
13 DELFPTNCD25 D
14 SIGDELFPTNCD25 Q
15 FIOD25 F
16 SIGFIOD25 Q
17 DELFIOD25 D
18 SIGDELFIOD25 Q
-----------------------------------
OPENED INPUT MTZ FILE
Logical Name: /home/briggs/CCP4_REMOTE/ccp4/examples/rnase/rnase25.mtz Filename: /home/briggs/CCP4_REMOTE/ccp4/examples/rnase/rnase25.mtz
Data line--- LABIN F=FNAT SIGF=SIGFNAT FREE=FreeR_flag
FORMATTED UNKNOWN file opened on unit 22
Logical name: sfcheck_mtz.cif, Filename: sfcheck_mtz.cif
OPENED INPUT MTZ FILE
Logical Name: /home/briggs/CCP4_REMOTE/ccp4/examples/rnase/rnase25.mtz Filename: /home/briggs/CCP4_REMOTE/ccp4/examples/rnase/rnase25.mtz
N,hkl,F,sig,stat : 5000 13 13 0 432.7 8.368 o
--- read file of structure factors. ---
Environment variable SYMINFO not set ... guessing location of symmetry file.
SYMINFO file set to /home/briggs/CCP4_REMOTE/ccp4/lib/data/syminfo.lib
--- Pscale ---
--- Check Patterson for pseudo-translation ---
--- file statistics ---
----------------------------------------------
--- Crystal ---
PDB_code : XXXX
Name : XXXXXXXX ?
Date :XX-XXX-XX
Cell: 64.90 78.32 38.79 90.00 90.00 90.00
Space group : P 21 21 21
No symmetry operators : 4
----------------------------------------------
--- Structure factors ---
Resolution /input data/ : 49.97 - 2.50
Number of reflections : 7217 ( in_file : 7217)
Number of reflections with I > sigma(I) : 7164
Number of reflections with I > 3sigma(I): 7030
R_stand(I) = / : 0.030
Number of acceptable reflections: 7217
for resolution : 49.97 - 2.50
Optical Resolution: 1.79
Expected Optical Resolution for complete data set: 1.79
/ Optical resolution - expected minimal distance between
two resolved peaks in the electron density map./
Resmax_used(opt): 2.84
Number of max possible refls : 7278 actual : 7217
Completeness : 99.2 %
R_stand(F) = / :0.017
Boverall /estimated by Patterson/ : 31.56
Minimal estimated error : 0.0182
Pseudo-translation is not detected.
Minimal estimated error : 0.0182
Perfect twinning test /^2 : 1.9810
Anisotropic distribution of Structure Factors:
Ratio of Eigen values : 0.7014 1.0000 0.8282
----------------------------------------------
--- Create PostScript file ---
XXXX
* Plotfile: sfcheck_XXXX.ps