--- 1201_refmac5_review-orig.log.html	2008-02-12 15:32:17.000000000 +0000
+++ 1201_refmac5_review-mod.log.html	2008-02-12 15:24:57.000000000 +0000
@@ -160,6 +160,7 @@
   I am reading library. Please wait.
                 mon_lib.cif
 
+<!--SUMMARY_BEGIN-->
   WARNING : CIS peptide bond is found, angle =      6.48
             ch:AA   res: 204  LYS-D    --> 205  GLY
   WARNING : description of link:LYS-D-GL is not in the dictionary.
@@ -174,6 +175,7 @@
             link will be created with bond_lenth =   1.420
   WARNING : link:LYS-D-GL is found dist =     1.183 ideal_dist=     1.420
             ch:AA   res: 203  LYS-D    at:O   .->AA   res: 205  GLY      at:CA  .
+<!--SUMMARY_END-->
 
   --------------------------------
   --- title of input coord file ---
@@ -198,6 +200,8 @@
   I am writing new library:
   /y/people/ccp4/projects/testing/final_pdbset1_refmac1-coot-0.cif
 
+<!--SUMMARY_BEGIN--> 
+$TEXT:Warning: $$ comment $$
 Important, Important, Important!!!!!
  
 Your coordinate file has a ligand which has either minimum or no description in the library
@@ -211,6 +215,7 @@
 If you are happy with the library description then use the keyword (MAKE CHECK NONE)
 I.e. do not check correctness of the coordinates
 ===> Error: New ligand has been encountered. Stopping now
+<!--SUMMARY_END-->
 
 <B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN-->
  Refmac_5.4.0065:  New ligand has been encountered. Stopping now