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CCP4 Study Weekend 2001 |
| Web resources from presentations |
CCP4 Study Weekend
Molecular Replacement and its Relatives
University of York
5-6 January 2001
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Friday 5th January Session 1 Introduction, basic concepts |
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| Rotation, angles and matrices (introduction to nomenclature, Patterson methods) |
Phil Evans |
| MRC Laboratory of Molecular Biology, Cambridge, UK | Molecular replacement method | Michael Rossmann |
| Rossmann Lab at Purdue University | |
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Session 2 Phaseless molecular replacement |
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| Implementation of MR in AMoRe | Jorge Navaza |
| AMoRe | CNRS Gif-sur-Yvette - Laboratoire de Genetique des Virus |
| Likelihood-based molecular replacement | Randy Read |
| BEAST | Protein Crystallography Course for Structural Medicine |
| Locked rotation and translation functions | Liang Tong |
| COMO | Liang Tong Homepage |
| Patterson correlation method | Ralf Grosse-Kunstleve |
| CNS | Ralf's Presentation on-line |
| Molecular (Re)Placement | Gerard Bricogne |
| Buster Development Group | |
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Session 3 Case Studies |
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| NMR trial models: experiences with Im7 and p85 SH2 | Richard Pauptit |
| astrazeneca.com | |
| EM starting model | Eleanor Dodson |
| EJD at YSBL | |
| Phasing from an envelope | Qhan Hao |
| Qhan Hao at DMU | |
| Electron density as starting model | Jim Naismith |
| The Naismith Group | |
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Saturday 6th January Session 4 Finding a model from scanning genomics databases |
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| Overview of structural genomics | Janet Thornton |
| CATH | UCL Biochemistry BSM Group |
| Finding motifs and putting them together | Tom Oldfield |
| Data mining | Tom Oldfield's MSI page |
| Threading as tool for model making | David Jones |
| THREADER | Brunel Bioinformatics Group |
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Session 5 Fragment fitting |
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| FFFear | Kevin Cowtan |
| FFFear | Kevin Cowtan's homepage, University of York, UK |
| ARP/wARP for refining and rebuilding molecular replacement derived models | Anastassis Perrakis |
| ARP/wARP | ARP/wARP Home Page |
| Spherically averaged phased translation function | Alexei Vagin |
| Molrep | Alexei Vagin's home page |
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Session 6 New approaches |
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| Solution solution: MR with NMR | Yu Wai Chen |
| Yu Wai Chen's Home Page | |
| A stochastic approach to molecular replacement | Nicholas M Glykos |
| Queen of Spades | Nicholas M Glykos' homepage |
| Molecular Replacement using EPMR (Genetic algorithm Acta 55, 484-491) | Charles Kissinger |
| EPMR | agouron.com |
| The application of anomalous signal of sulphur from a single wavelength (CUKalpha) for routinely phasing protein diffraction data | Cheng Yang |
| msc.com | |