CCP4 Study Weekend 2001 | |
Web resources from presentations |
CCP4 Study Weekend
Molecular Replacement and its Relatives
University of York
5-6 January 2001
Friday 5th January Session 1 Introduction, basic concepts |
|
Rotation, angles and matrices (introduction to nomenclature, Patterson methods) |
Phil Evans |
MRC Laboratory of Molecular Biology, Cambridge, UK | |
Molecular replacement method | Michael Rossmann |
Rossmann Lab at Purdue University | |
Session 2 Phaseless molecular replacement |
|
Implementation of MR in AMoRe | Jorge Navaza |
AMoRe | CNRS Gif-sur-Yvette - Laboratoire de Genetique des Virus |
Likelihood-based molecular replacement | Randy Read |
BEAST | Protein Crystallography Course for Structural Medicine |
Locked rotation and translation functions | Liang Tong |
COMO | Liang Tong Homepage |
Patterson correlation method | Ralf Grosse-Kunstleve |
CNS | Ralf's Presentation on-line |
Molecular (Re)Placement | Gerard Bricogne |
Buster Development Group | |
Session 3 Case Studies |
|
NMR trial models: experiences with Im7 and p85 SH2 | Richard Pauptit |
astrazeneca.com | |
EM starting model | Eleanor Dodson |
EJD at YSBL | |
Phasing from an envelope | Qhan Hao |
Qhan Hao at DMU | |
Electron density as starting model | Jim Naismith |
The Naismith Group | |
Saturday 6th January Session 4 Finding a model from scanning genomics databases |
|
Overview of structural genomics | Janet Thornton |
CATH | UCL Biochemistry BSM Group |
Finding motifs and putting them together | Tom Oldfield |
Data mining | Tom Oldfield's MSI page |
Threading as tool for model making | David Jones |
THREADER | Brunel Bioinformatics Group |
Session 5 Fragment fitting |
|
FFFear | Kevin Cowtan |
FFFear | Kevin Cowtan's homepage, University of York, UK |
ARP/wARP for refining and rebuilding molecular replacement derived models | Anastassis Perrakis |
ARP/wARP | ARP/wARP Home Page |
Spherically averaged phased translation function | Alexei Vagin |
Molrep | Alexei Vagin's home page |
Session 6 New approaches |
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Solution solution: MR with NMR | Yu Wai Chen |
Yu Wai Chen's Home Page | |
A stochastic approach to molecular replacement | Nicholas M Glykos |
Queen of Spades | Nicholas M Glykos' homepage |
Molecular Replacement using EPMR (Genetic algorithm Acta 55, 484-491) | Charles Kissinger |
EPMR | agouron.com |
The application of anomalous signal of sulphur from a single wavelength (CUKalpha) for routinely phasing protein diffraction data | Cheng Yang |
msc.com |