CCP4 Workshop
Osaka, Japan
27 Nov. 2006 Ð 1 Dec. 2006
General Structure:
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Mornings |
Lectures (9am-1pm) |
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Afternoon |
Tutorials (2:30pm-6:00pm) |
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Evening |
Problem Solving (7:30pm-...) |
Tutors:
G. Murshudov (York)
K. Cowtan (York)
P. Emsley (York)
P. Evans (MRC-LMB)
C. Ballard (Daresbury)
S. Cohen (NKI)
A. Nakagawa (Osaka)
R. Steiner (Imperial College)
E. Krissinel (EBI)
R. Pannu (Leiden)
T. Kosada (Osaka/PDBj)
Timetable:
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Mon 27 Nov. |
Data processing |
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1a. Introduction and Welcome |
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1b. Data Processing using MOSFLM
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P. Evans |
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1c. SPRING8 |
A.Nakagawa |
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Coffee |
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1d. Scaling and Merging |
P. Evans |
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1e. Data Quality |
P. Evans |
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Lunch |
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Tutorial: MOSFLM, SCALA, TRUNCATE |
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Tue 28 Nov. |
Experimental Phasing |
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2a. Theory of Maximum Likelihood |
K. Cowtan |
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2b. Theory of Experimental Phasing |
R. Pannu |
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Coffee |
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2c. Phasing in CCP4 (mlphare, bp3, crank) |
R. Pannu |
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2d. Density Modification |
K.Cowtan |
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Lunch |
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2e. Shelxd |
P. Emsley |
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Tutorial: Experimental phasing and density modification |
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Wed 29 Nov. |
Molecular Replacement |
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3a. Molrep |
G.Murshudov |
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3b. Phaser-MR |
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Coffee |
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3c. BALBES |
G. Murshudov |
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3d. Mr BUMP |
C. Ballard |
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Lunch |
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Tutorial: Molecular Replacement: MOLREP, Phaser and pipelines |
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Thursday 30 Nov. |
Refinement and building |
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4a. Refinement |
G.Murshudov |
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4b. Refmac |
R. Steiner |
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Coffee |
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4c. Arp/Warp |
S. Cohen |
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4d. Coot model completion |
P. Emsley |
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Lunch |
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Tutorial: Refinement and building: REFMAC, ARP/WARP, COOT |
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Friday 1 Dec. |
Model Validation |
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5a. Validation in Coot |
P.Emsley |
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5b. Deposition Japan |
T. Kosada |
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Coffee |
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5c. SSM |
E. Krissinel |
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5d. PISA |
E. Krissinel |
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Tutorial: PISA, SSM |
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